Epitope prediction for different type of cells with BcePred, IEDB, ABCPred, LBtopeContinuous B-Cell Epitope predictionMar 8, 2024Mar 8, 2024
Protein secondary structure analysis with Sopma and InterProIn Sopma we can see the sequence in black (if it has no influence on the secondary structure) or in color (if it has influence)Feb 25, 2024Feb 25, 2024
Predicting physicochemical parameters of a protein with ProtParam and AA-PropWe just need to paste the peptide sequence, submit and we will have the number of amino acids, molecular weight, isoelectric point of the…Feb 25, 2024Feb 25, 2024
How to predict if a protein is an allergen with AlgPred and AllerTop 2.0We just need to go to the websites of each tool, paste the peptide sequence and submit itFeb 22, 2024Feb 22, 2024
Predicting antigenic determinants in a proteinAntigenic determinants are important in immunology as they are the recognizable regions of the antigen. But first of all we need to know if…Feb 22, 2024Feb 22, 2024
How to do a rapid functional sequence annotation with PannzerWe just need to open Pannzer2 website and paste some peptide sequences in Fasta format. This will let us know a description of the…Feb 18, 2024Feb 18, 2024
Predicting ORF with ORF FinderAn Open Reading Frame is a sequence that start with a start codon and end with a stop codon. If we go to NCBI and search ORF Finder in the…Feb 17, 2024Feb 17, 2024
Identifying a gene with Genscan and BlastpWe just need to go to genscan site and paste or upload our sequence and click runFeb 15, 2024Feb 15, 2024
How to plot CpG-Islands with cpgplotCpG-Islands are common near the promoters and are importand for regulation of the gen expresion through methylationFeb 14, 2024Feb 14, 2024
How to predict promoters in eukaryotic DNA with NNPPFirst we can download sequences from EPD (Eukaryotic Promoter Database) of ExPASy.Feb 14, 2024Feb 14, 2024
